PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28577.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 390aa    MW: 42456.1 Da    PI: 5.1513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28577.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11204246754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  KHN28577.1 204 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 246
                 79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17200267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9203246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.07E-13204250No hitNo description
Gene3DG3DSA:4.10.280.108.7E-16204259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.38E-6319360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNMERYTLPA PPNIIPEEEE NIAIAMGAPL IPSFKSMLQQ HPQQLDSYFN SSISSTTIPF  60
VPNMDSFLSL DPFSPSFFNN SSSSNMALDP GFDLGLDTGL HSSAPAPHLF SQAHMMGFEF  120
SDLEALAGPG NVNVPFADGA KAAALLRKWE EGGGEGEEGS SADVGGSGLN YESDEQNESN  180
GLKLSENGGD NKGKKKGLPA KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI  240
DYLKELLQRI NDLHHELEST PPGSSLTPSS STSFQPLTPT LPTLPCRVKE ELYPGTLPSP  300
KNQAAKVEVR VREGRTVNIH MFCTRRPGLL LSTMKALDNL GLDVQQAVIS CFNGFALDVF  360
KAEQCREGQD VLPEQIKAVL SDSAGFHGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193211KKKGLPAKNLMAERRRRKK
2205212ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932240.0FJ393224.1 Glycine max inducer of CBF expression 2 (ICE2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238577.10.0inducer of CBF expression 2
SwissprotQ9LSE21e-116ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0B2R9Z00.0A0A0B2R9Z0_GLYSO; Transcription factor ICE1
STRINGGLYMA19G27483.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.45e-99bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]