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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN28577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 390aa MW: 42456.1 Da PI: 5.1513 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.3 | 1e-11 | 204 | 246 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L KHN28577.1 204 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 246 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.682 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-17 | 200 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-14 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-9 | 203 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.07E-13 | 204 | 250 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.7E-16 | 204 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.38E-6 | 319 | 360 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MNMERYTLPA PPNIIPEEEE NIAIAMGAPL IPSFKSMLQQ HPQQLDSYFN SSISSTTIPF 60 VPNMDSFLSL DPFSPSFFNN SSSSNMALDP GFDLGLDTGL HSSAPAPHLF SQAHMMGFEF 120 SDLEALAGPG NVNVPFADGA KAAALLRKWE EGGGEGEEGS SADVGGSGLN YESDEQNESN 180 GLKLSENGGD NKGKKKGLPA KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI 240 DYLKELLQRI NDLHHELEST PPGSSLTPSS STSFQPLTPT LPTLPCRVKE ELYPGTLPSP 300 KNQAAKVEVR VREGRTVNIH MFCTRRPGLL LSTMKALDNL GLDVQQAVIS CFNGFALDVF 360 KAEQCREGQD VLPEQIKAVL SDSAGFHGMM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 211 | KKKGLPAKNLMAERRRRKK |
2 | 205 | 212 | ERRRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ393224 | 0.0 | FJ393224.1 Glycine max inducer of CBF expression 2 (ICE2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238577.1 | 0.0 | inducer of CBF expression 2 | ||||
Swissprot | Q9LSE2 | 1e-116 | ICE1_ARATH; Transcription factor ICE1 | ||||
TrEMBL | A0A0B2R9Z0 | 0.0 | A0A0B2R9Z0_GLYSO; Transcription factor ICE1 | ||||
STRING | GLYMA19G27483.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2414 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 5e-99 | bHLH family protein |
Publications ? help Back to Top | |||
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